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「Biophysics and Physicobiology」にJean-François Gibrat “On the use of algebraic topology concepts to check the consistency of genome assembly”を掲載

2019年11月29日 学会から

日本生物物理学会欧文誌[Biophysics and Physicobiology]に以下の論文が新規掲載されました。

Jean-François Gibrat “On the use of algebraic topology concepts to check the consistency of genome assembly”

【Significance】
On the use of algebraic topology concepts to check the consistency of genome assembly

This paper presents an algorithm for assembling the genome based on an Overlap-Layout-Consensus (OLC) graph. It also shows how algebraic topology concepts can be used to analyze this OLC graph, which makes it possible to know in advance whether the assembly will be simple or will require a thorough analysis of the graph (identification of loops in the graph caused by genomic repetitions).

Biophysics and Physicobiology, Vol.16, 444-451
URL:https://doi.org/10.2142/biophysico.16.0_444


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